International PhD Course in Molecular Medicine
Training course
Our PhD Program is aimed to provide outstanding interdisciplinary training in the broad area of Molecular Medicine. PhD students are expected to spend most of their time working on a research project under the direct supervision of a Director of Studies and with the external scientific advice of a Second Supervisor.
Each year, the PhD Course in Molecular Medicine offers a panel of courses that expose students to the most exciting and active research areas in the field and provide training in the transferable skills required for a successful career in academia and beyond. Training is delivered in English and covers the three-year duration of the PhD Course.
Students are expected to play an integral part in the life of our research community also taking advantage of the many lectures, workshops and seminars organized by the San Raffaele Scientific Institute.
Students may have the possibility to be involved in teaching and in supervising undergraduate students.
Training program a.y. 2026/2027
Please find below the approved training activity for the a.y. 2026/2027
Communicating research: Short oral presentation
IT Course
Research Integrity
Gender Equality
Statistical methods in R
Curriculum specific courses
PhD interdisciplinary seminars
PhD Invited Lectures
Career opportunities seminar series
Diving into the data management plan (DMP) and IRIS
Pills of Bioinformatics
Communicating research: Writing a paper + The editorial process
Curriculum specific courses
Gender Medicine
Scientific Pubblishing
Writing Successful Fellowship
Open science in practice
Statistical methods in biomedical research
Statistical Methods in R
Application of statistical analyses to basic research use cases
Application of statistical analyses to clinical use cases
Foundamentals of AI in medicine
PhD interdisciplinary seminars
PhD Invited Lectures
Career opportunities seminar series
Pills of Bioinformatics
How to review a scientific papers
Science Communication
The european research framework: policy, funding programmes and research management
PhD interdisciplinary seminars
PhD Invited Lectures
Career opportunities seminar series
Statistical methods in biomedical research
Statistical Methods in R
Application of statistical analyses to basic research use cases
Application of statistical analyses to clinical use cases
Foundamentals of AI in medicine
PhD interdisciplinary seminars
PhD Invited Lectures
Career opportunities seminar series
Pills of Bioinformatics
Explotation of Research Results and Intellectual Property
Training program a.y. 2025/2026
Please find below the list of seminars and courses for a.y. 2025/2026.
The role of glial cells in neurodegeneration (NEN)
This course explores the vital role of glial cells in maintaining brain health. It will examine the alterations in glial cells as they age, their contributions to brain inflammation, and how these changes are linked to neurodegenerative processes. Students will engage with recent research and innovative strategies to modulate glial cell activity to slow disease progression and enhance neuroprotection. Lessons will also incorporate various experimental models, including fish, mouse, and human systems, to illustrate the diverse mechanisms of glial cell function and their implications for treatment. By the end of the course, students will have an improved understanding of contemporary developments in glial biology and be equipped to explore new approaches to tackling neurodegenerative diseases.
The revolution of immunotherapy (ECM)
This seminar focuses on current applications and the latest developments in the laboratory. Immunotherapy has represented a turning point in the treatment of major oncological diseases and beyond. This seminar will explore the field of oncology, both from a biological perspective and its current application as a therapeutic weapon. It will also address future challenges and the treatment of side effects. The Seminar will have a translational approach, including important researcher from inside our Institute and from outside allowing for a fruitfull discussion
Fibroblastic Reticular Cells: Regulators of Immunity in Physiology and Cancer (BAIO)
Fibroblastic reticular cells (FRCs) in lymphoid tissues, such as lymph nodes, have emerged as crucial players in the induction and regulation of both innate and adaptive immunity. This course will provide an overview of the current state-of-the-art knowledge on the origin and differentiation of FRCs, as well as the mechanisms through which FRCs support the organization and function of immune cells in both physiological conditions and cancer
Organ regeneration: models and mechanisms (GCT and CMB)
The course will explore key topics in tissue regeneration, encompassing fundamental concepts, molecular mechanisms, and the latest advances in the field. It will cover a range of model organisms, from reptiles, fish, and nematodes to mammals such as rodents and humans, and will address various tissue types, including epithelial (skin, liver), muscle, and nervous tissue.
Communicating research: Short oral presentation - Embo Solutions
In this workshop, EMBO Press editors work with PhD students on the principles, practicalities and strategies of scientific publication. The workshop is focused on how to effectively present your work in a short oral form in various contexts - e.g. poster presentation, flash talk or elevator pitch. The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
IT course - UniSR IT Team
The course aims to provide PhD students with methodological and technological knowledge on the use of tools related to office automation, networking, cloud and cyber security. The course will cover the following topics: basic and advanced use of Microsoft Excel, advanced use of Microsoft Word, communication protocols and security protocols, basic elements of computer security, data protection and advanced cyber security techniques.
Research Integrity - Roberto Buccione and Elena Criscuolo
The Research Integrity – General Principles seminar provides a basic overview of the core principles of research integrity, the definition of research misconduct and questionable research practice, general advice on dealing with the complex issues that can arise while planning, conducting and reporting research, and the functions and scope of the Research Integrity Office.
Gender Equality - Simone Mattavelli and Monica Fabbri
Notwithstanding the significant social progresses made in the last decades and the introduction of targeted political interventions, a male-female imbalance persists in modern Western societies. The consequence of this phenomenon, known as gender bias, have been studied at many different levels. For instance, women are underrepresented when it comes to higher leadership positions and numerous studies showed that gender bias in science disciplines and medicine is persistent today. Moreover, gender bias can be expressed in multiple ways, from more blatant to subtle manifestations, such as linguistic expressions adopted in everyday interactions.
Research in social cognition has shown that the roots of gender bias must be searched in the concept stereotype. Stereotypes are nothing else than labels that humans tend to attach to social entities and categories and that drive the way we think and behave. Following a social-cognitive approach, this course aims at providing a better understanding of gender bias by getting to know (i) what gender-stereotypes are; (ii) how they are formed and nourished by our society; (iii) what are their consequences; and (iv) what interventions can help dismantling them.
Finally, the course will include an in-depth analysis dedicated to the "Gender Equality Plan" approved by UniSR.
Statistical methods in R - Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced. The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Problem Solving Logics - Enrico Dalla Rosa
The focus of this class is human error. Our species did a good job in surviving the evolution lottery, thanks also to a good ability in avoiding - as a whole - fatal mistakes. But the growing complexity of the world makes it more and more important avoiding mistakes that can have dire consequences, particularly in some domains – medicine is one of them.
Although we like to think that, when facing challenging situations, we are basically rational, it's easy to show that most people - even those who have a very high IQ - can make, in an easily predictable way, relevant mistakes. During the cycle of lessons, we will try to vaccinate ourselves against some of the quite predictable biases that push us to do mistakes even we try as carefully as we can to avoid doing so.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO) and PhD Office.
Diving into the data management plan (DMP) and IRIS - Silvia Corbetta and Marco Soriano
This course will discuss two essential research tools. The first part will focus on the DMP, i.e., a structured document which outlines all aspects of the research data lifecycle (e.g., data organisation and curation, adequate provisions for their preservation and sharing). Writing a DMP will address in advance all needs/challenges that are likely to be encountered over the course of a research project, and it is considered best practice, as it makes work more efficient and contributes to the long-term preservation of data. After introducing the typical components of a DMP practical information will be provided on how to address them. Furthermore, though the Q&A session students will have the chance to discuss the challenges their facing and clarify any doubt about their DMP.
The second part of the course will focus on the UniSR IRIS. After introducing the core concepts and principles in Open Access to publications, practical information will be provided on how to use IRIS for depositing, collecting and disseminating the publications.
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
The role of glial cells in neurodegeneration (NEN)
This course explores the vital role of glial cells in maintaining brain health. It will examine the alterations in glial cells as they age, their contributions to brain inflammation, and how these changes are linked to neurodegenerative processes. Students will engage with recent research and innovative strategies to modulate glial cell activity to slow disease progression and enhance neuroprotection. Lessons will also incorporate various experimental models, including fish, mouse, and human systems, to illustrate the diverse mechanisms of glial cell function and their implications for treatment. By the end of the course, students will have an improved understanding of contemporary developments in glial biology and be equipped to explore new approaches to tackling neurodegenerative diseases.
The revolution of immunotherapy (ECM)
This seminar focuses on current applications and the latest developments in the laboratory. Immunotherapy has represented a turning point in the treatment of major oncological diseases and beyond. This seminar will explore the field of oncology, both from a biological perspective and its current application as a therapeutic weapon. It will also address future challenges and the treatment of side effects. The Seminar will have a translational approach, including important researcher from inside our Institute and from outside allowing for a fruitfull discussion
Fibroblastic Reticular Cells: Regulators of Immunity in Physiology and Cancer (BAIO)
Fibroblastic reticular cells (FRCs) in lymphoid tissues, such as lymph nodes, have emerged as crucial players in the induction and regulation of both innate and adaptive immunity. This course will provide an overview of the current state-of-the-art knowledge on the origin and differentiation of FRCs, as well as the mechanisms through which FRCs support the organization and function of immune cells in both physiological conditions and cancer
Organ regeneration: models and mechanisms (GCT and CMB)
The course will explore key topics in tissue regeneration, encompassing fundamental concepts, molecular mechanisms, and the latest advances in the field. It will cover a range of model organisms, from reptiles, fish, and nematodes to mammals such as rodents and humans, and will address various tissue types, including epithelial (skin, liver), muscle, and nervous tissue.
Communicating research: Writing a paper - The editorial process - Embo Solutions
In this workshop, EMBO Press editors work with PhD students or Postdocs on the principles, practicalities and strategies of scientific publication. Topics covered include understanding the structure and content of a manuscript, assembling figures and writing effective titles and abstracts. The participants will also learn to navigate the editorial process at journals.
The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
Scientific Publishing - Dr. Roberto Buccione
The course is based on the assumption that the impact of scientific discoveries would be very limited without the communication of results to peers. This communication can take many forms, but most typically as peer-reviewed academic publications. The basic mechanisms of peer-review, the editorial process in scientific journals, and finally information on the correct attribution of authorship, based on rules accepted by the community, as well as the division of responsibilities and rights associated with authorship, will be discussed.
Gender Medicine - Alaide Chieffo and Andrea Salonia
Historically, medicine and biology have been developed using an androcentric approach, generalizing results to females and restricting sex differences to reproductive issues only. The course “Gender Medicine” will provide an introduction to the next-generation medicine, explain definitions, highlight normative references and resources, and discuss examples and implications for health research and services.
Writing Successful Fellowship Applications - Thiago Carvalho and David del Álamo (Fellowsherpa)
For many early career researchers, writing a fellowship application will be their first experience with the highly competitive scientific funding system. Fellowsherpa’s two-day interactive course exposes participants to some of the most prestigious international fellowships, including the Marie Skłodowska-Curie, EMBO, and Human Frontier Science Program postdoctoral programs.
Statistical methods in biomedical research - Paola Rancoita and Chiara Brombin
The course provides basic and advanced concepts for the collection, organization, and statistical analysis of data in the biomedical sciences. The course is divided into two modules:
MODULE 1: Inferential Statistics: comparison among groups and bivariate analysis.
MODULE 2 : Modelling the relationships between variables
Participation in modules not by year of enrollment but by skills.
Statistical methods in R - Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced.
The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Business Planning - Giancarlo Monza
Research and development (R&D) of today is the medical practice of tomorrow. Unfortunately, the sustainability of R&D is at risk. Other highly innovative areas (e.g. aerospace industry, IT and also … the Army) have tried to address the issue of sustainability by enhancing their project planning / execution capabilities and their focus on human factors.
During the conversations we will review the basic techniques of project planning and team (=people) performance to minimize / prevent human errors, focusing on the peculiarity of R&D in health care, where ethics and patient-centric approaches are paramount. Practical examples of failed and successfully completed projects in healthcare will be presented.
Fundamentals of AI in medicine - Carlo Tacchetti - Patrick Scuri - Andrea Corvaglia - Marco Denti - Alberto Traverso
Artificial Intelligence (AI) is gaining more and more popularity in healthcare. Technologies enabling automation of time-consuming clinical tasks or clinical decision support systems based on machine learning, a branch of AI, will potentially improve cancer care. Nevertheless, the unconscious use of such algorithms, often developed outside the clinical domain, without involving the healthcare professionals will reduce the clinical impact, creating mistrust in AI. We will introduce to young clinical researchers the foundations of AI including an overview on major ML algorithms and their applications with healthcare data, design of clinical studies involving the development of AI algorithms, and privacy/ethical issues related to the usage of AI algorithms in a hospital.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
Application of statistical analyses to basic research use cases - Giovanni Tonon
During this 2-hour tutorial, questions arising from everyday research practice will be presented, and students will be guided through the most appropriate statistical tools and approaches to address them. GraphPad Prism software will be used, and students will receive hands-on training in its application.
Application of statistical analyses to clinical research use cases - Chiara Brombin
The tutorial will demonstrate the main functions and procedures of IBM SPSS software for analyzing data commonly collected in clinical practice. The session will adopt an applied approach, aimed at developing practical skills in using the software to address specific research questions.
Open Science in practice - SIlvia Corbetta - Maya Fedeli - Marco Soriano - Marco Morelli
The Open Science approach includes all practices that promote accessibility and transparency at all levels of the research project lifecycle, to ensure the reproducibility and social utility of scientific research. The course will be divided into two sessions. One session will focus on the fundamental principles of the Open Science approach, providing practical information, guidelines, and tools on how to make scientific publications (and other research outputs) open, as well as how to adopt a methodology such as Citizen Science, aimed at fostering collaboration between the scientific community and society. The other session will focus on feedback regarding the Data Management Plans (DMP) previously submitted by students, and will address the less clear aspects of responsible data management and sharing of research data.
The role of glial cells in neurodegeneration (NEN)
This course explores the vital role of glial cells in maintaining brain health. It will examine the alterations in glial cells as they age, their contributions to brain inflammation, and how these changes are linked to neurodegenerative processes. Students will engage with recent research and innovative strategies to modulate glial cell activity to slow disease progression and enhance neuroprotection. Lessons will also incorporate various experimental models, including fish, mouse, and human systems, to illustrate the diverse mechanisms of glial cell function and their implications for treatment. By the end of the course, students will have an improved understanding of contemporary developments in glial biology and be equipped to explore new approaches to tackling neurodegenerative diseases.
The revolution of immunotherapy (ECM)
This seminar focuses on current applications and the latest developments in the laboratory. Immunotherapy has represented a turning point in the treatment of major oncological diseases and beyond. This seminar will explore the field of oncology, both from a biological perspective and its current application as a therapeutic weapon. It will also address future challenges and the treatment of side effects. The Seminar will have a translational approach, including important researcher from inside our Institute and from outside allowing for a fruitfull discussion
Fibroblastic Reticular Cells: Regulators of Immunity in Physiology and Cancer (BAIO)
Fibroblastic reticular cells (FRCs) in lymphoid tissues, such as lymph nodes, have emerged as crucial players in the induction and regulation of both innate and adaptive immunity. This course will provide an overview of the current state-of-the-art knowledge on the origin and differentiation of FRCs, as well as the mechanisms through which FRCs support the organization and function of immune cells in both physiological conditions and cancer
Organ regeneration: models and mechanisms (GCT and CMB)
The course will explore key topics in tissue regeneration, encompassing fundamental concepts, molecular mechanisms, and the latest advances in the field. It will cover a range of model organisms, from reptiles, fish, and nematodes to mammals such as rodents and humans, and will address various tissue types, including epithelial (skin, liver), muscle, and nervous tissue.
How to review scientific papers - Embo Solutions
In this workshop, EMBO Press editors work with PhD students on the principles and practicalities of peer review. Topics covered include the key elements of good peer review and the role of peer review in publishing reproducible science. We also discuss ethical considerations such as conflicts of interest and give guidelines to young scientists about how to become good reviewers.
The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
Science Communication- Maya Fedeli
The Science Communication course is designed to develop the communication skills of PhD students, enabling them to convey the complex scientific concepts of research to a wider audience in a clear, engaging, and accessible manner. During the course, students will gain an understanding of science communication strategies, learn to translate technical language into a format understandable by the general public, and hone their skills in the use of different communication platforms and tools. After an introduction to the fundamentals of science communication, topics such as writing techniques and the use of clear and accessible language, development of presentation skills, visual communication, correct and impactful use of media and social media will be addressed.
Open Science in practice: principles and tools for open access to scientific publications and research data - Silvia Corbetta - Marco Soriano
The Open Science approach includes all practices that promote accessibility and transparency at all levels of the research project lifecycle. This course will introduce the core concepts and principles in Open Science (e.g., open access, data sharing) and provide guidelines and tools on how to make scientific publications and research data open, to guarantee reproducibility and societal utility of scientific research. Furthermore, practical information will be provided on how to use the institutional repositories for publications (IRIS) and data (ORDR).
Statistical methods in biomedical research - Paola Rancoita and Chiara Brombin
The course provides basic and advanced concepts for the collection, organization, and statistical analysis of data in the biomedical sciences. The course is divided into two modules:
MODULE 1: Inferential Statistics: comparison among groups and bivariate analysis.
MODULE 2 : Modelling the relationships between variables
Participation in modules not by year of enrollment but by skills.
Statistical methods in R - Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced.
The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Project Assessment - Gianni Navalesi
And what happens if my scientific/clinical project is not going well? Shall we have some other opportunity, or shall we throw on the basket what we have done? We will focus on evaluating the importance of having at hand techniques of risk based approach, risk planning and risk minimization measures. These tools are aimed at mitigating any unwanted deviations from the scientific target.
In this regard, it will be highlighted the importance to have in mind other potential solutions in the case that the primary target could not be achieved. We will discuss some examples of drugs that have been repurposed from one clinical indication to another (i.e. Sildenafil),as well as the opportunity to switch to other fields such as Medical Devices or Food supplement
Fundamentals of AI in medicine - Carlo Tacchetti -Patrick Scuri - Andrea Corvaglia - Alberto Traverso
Artificial Intelligence (AI) is gaining more and more popularity in healthcare. Technologies enabling automation of time-consuming clinical tasks or clinical decision support systems based on machine learning, a branch of AI, will potentially improve cancer care. Nevertheless, the unconscious use of such algorithms, often developed outside the clinical domain, without involving the healthcare professionals will reduce the clinical impact, creating mistrust in AI. We will introduce to young clinical researchers the foundations of AI including an overview on major ML algorithms and their applications with healthcare data, design of clinical studies involving the development of AI algorithms, and privacy/ethical issues related to the usage of AI algorithms in a hospital.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO) and PhD Office
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
The European research framework: policy, funding programmes and research management - Federica Prete
The course aims to provide an understanding of the pathway from the topic of a call, through the development of a project idea, to the drafting and submission of a proposal within the framework of Horizon Europe, and to offer knowledge and tools for developing European research projects. Furthermore, the course will present the main features of Horizon Europe and the ERC and Marie Curie programmes. Finally, the course will introduce Citizen Science and how to integrate this innovative approach into research projects.
Training program a.y. 2024/2025
Please find below the list of seminars and courses for a.y. 2024/2025.
Courses curriculum-specific:
Current Mechanism Understanding and Treatment Development in Epilepsy (NEN)
Epilepsy is a highly heterogeneous disorder affecting over 50 million people worldwide. Epileptic patients are characterized by recurrent seizures, which can vary widely in type and etiology. While some cases are clearly linked to genetic factors, others are caused by acquired conditions such as stroke, infection, traumatic brain injury, or tumors, which can disrupt the normal patterns of brain activity and lead to seizures. Notably, one-third of patients do not respond to current treatments. This PhD course will delve into the fundamental mechanisms underlying both genetic (Dr. Ethan Goldberg, Children's Hospital of Philadelphia) and acquired epilepsy (Dr. Cristophe Bernard, Institute of Systems Neuroscience, Aix Marseille Université, France). It will then explore secondary alterations that occur in the epileptic brain and discuss the potential to target these modifications for therapeutic interventions. (Dr. Anna Maria Vezzani, Mario Negri Institute for Pharmacological Research). Finally, the course will present innovative therapeutic approaches based on gene therapy, which are suitable for both genetic and acquired epilepsies (Prof. Gabriele Lignani, University College London). Delivered by leading experts, this course will offer participants an opportunity to deepen their understanding of epilepsy and contribute to the development of innovative solutions for identifying new mechanisms and therapies.The morning sessions will feature frontal lectures.In the afternoon of the first day, students will be invited to present papers in a Journal Club format. Furthermore, they will be divided in working groups and will be assigned with a specific research question to be developed into a short experimental plan. In the afternoon of the second day of the course, those works will be discussed together with the organizers and the experts. By completing this course, participants will acquire the following competencies:
- Understand the key mechanisms underlying both genetic and acquired epilepsy
- Learn about research tools and models used in epilepsy research
- Identify the challenges in developing new treatments and therapies for epilepsy
Speakers: Prof. Michele Simonato, University of Ferrara (Introduction); Dr. Ethan Goldberg (Mechanisms underlying genetic epilepsies); Dr. Christophe Bernard (Mechanisms of acquired epilepsies); Dr. Anna Maria Vezzani (Secondary modifications in the epileptic brain); Prof. Gabriele Lignani (Gene therapy in epilepsy)
Innovative approaches to model and treat muscular and neuromuscular diseases (GCT)
Muscular and neuromuscular diseases represent a heterogeneous group of disorders with significant medical and societal impact. Neuromuscular and muscular diseases share several key features, as they both affect components of the motor system responsible for movements, respiration, posture, and other physical functions. Both types of diseases often result in muscle weakness, atrophy, or impaired function, whether due to direct damage to the muscle (as in muscular diseases) or disruption of the neural input needed for muscle activation and maintenance (as in neuromuscular diseases). Many of these conditions have a genetic basis, involving mutations in structural proteins (e.g., dystrophin in muscular dystrophy) or proteins required for neuromuscular junction transmission (e.g., acetylcholine receptors in myasthenia gravis). Both categories can involve progressive degeneration, leading to reduced mobility, fatigue, and compromised quality of life. Addressing these conditions requires a multidisciplinary approach, combining insights from genetics, neurology, and regenerative medicine to develop effective treatments.
The treatment of muscular and neuromuscular diseases has been revolutionized by the introduction of innovative Advanced Therapy Medicinal Products (ATMPs), which include gene-modified cells, viral vectors, and innovative molecular tools. Gene therapy offers the possibility to address the root causes of these diseases by introducing, repairing, or silencing specific genetic sequences. Stem cell-based approaches, enable the replacement of damaged or dysfunctional muscle cells and provide platforms for sustained protein delivery. Furthermore, disease modeling, using either patient-derived induced pluripotent stem cells (iPSCs), organoids, or transgenic mouse models, has become instrumental in understanding the molecular mechanisms underlying muscular and neuromuscular disorders. These models recapitulate the disease pathology, enabling the testing of therapeutic strategies and the identification of novel actionable targets. These advanced modalities are also combined with precision medicine approaches to tailor treatments to individual patients’ genetic and phenotypic profiles. These cutting-edge therapies represent a paradigm shift in addressing the underlying pathology of muscular and neuromuscular diseases, offering hope for long-term efficacy and improved patient outcomes.
Nevertheless, despite recent advances, ATMPs aimed at treating muscular and neuromuscular diseases face several challenges that limit their current effectiveness. Efficient delivery remains a major hurdle, as large tissues like skeletal muscles and the peripheral nervous system require widespread and targeted distribution, often hindered by barriers such as the blood-nerve barrier. Immune responses to viral vectors, as well as the large size of certain therapeutic genes (e.g., dystrophin in Duchenne muscular dystrophy), further complicate treatment. The durability of therapeutic effects is also an issue, as transgene expression or cell engraftment often declines over time in the diseased tissue environment. Additionally, the heterogeneity of these diseases and the need to target multiple tissues, such as skeletal muscle and heart, complicate therapy design. Current experimental models frequently fail to replicate human disease complexities, limiting predictive success, while chronic inflammation and fibrosis in affected tissues hinder regenerative approaches. Finally, the high cost and challenges of manufacturing ATMPs at scale make these therapies difficult to access. These challenges underscore the need for continued research and innovation to improve current therapeutic strategies and modeling of the disease.
Sex as a biological variable in physiology and disease (CMB and BAIO)
In this course, students will gain a better understanding of molecular mechanisms underlying the sex difference. Sex differences in physiology and disease can be due to sex hormones coming from the testes or ovaries, however, sex differences can also be caused by genes on the sex chromosomes that act outside of the gonads affecting several processes including cancer development and immune system modulation. Besides listening to experts in the field, students will have the opportunity to further discuss with the speakers about these topics by preparing an introductory lesson and explore career path options to undertake after the completion of their predoctoral studies.
Role of microbiota in patients with haematological malignancies undergoing cellular therapies: from translational research to routine clinical practice (ECM)
The microbiome include the microbiota, their associated genes, and their environment.The microbiota is critical for preserving tissues and stimulating immunity, but its alterations have been linked to disease and defects in immunity. The microbiota dysbiosis depends on many factors, including chemotherapy regimens, antibiotics and diet. Compromised intestinal barrier function is a prominent feature of inflammatory bowel disease and is critical also in the pathogenesis of graft-versus-host disease, a serious, potentially fatal consequence of hematopoietic stem cell transplantation. In fact, the composition of intestinal bacteria and their metabolites have been found in large multicenter prospective studies to be strongly associated with GVHD, treatment-related mortality, and overall survival. Thus, the opportunity to modulate the microbiota has become a relevant issue to investigate for treating life-threating conditions. Available approaches include specific diet modification, use of prebiotic and probiotics but also fecal microbiota transplantation, and refined antibiotic treatment. This seminar will address the translational role of the microbiota in personalized therapies in different conditions, from disease to possible prevention of complications and improvement of prognosis.
Communicating research: Short oral presentation - Embo Solutions
In this workshop, EMBO Press editors work with PhD students on the principles, practicalities and strategies of scientific publication. The workshop is focused on how to effectively present your work in a short oral form in various contexts - e.g. poster presentation, flash talk or elevator pitch. The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
IT course - Dr. Lorenzo Cibrario
The course aims to provide PhD students with methodological and technological knowledge on the use of tools related to office automation, networking, cloud and cyber security. The course will cover the following topics: basic and advanced use of Microsoft Excel, advanced use of Microsoft Word, communication protocols and security protocols, basic elements of computer security, data protection and advanced cyber security techniques.
Research Integrity - Dr. Roberto Buccione
The Research Integrity – General Principles seminar provides a basic overview of the core principles of research integrity, the definition of research misconduct and questionable research practice, general advice on dealing with the complex issues that can arise while planning, conducting and reporting research, and the functions and scope of the Research Integrity Office.
Gender Equality - Dr. Simone Mattavelli – Dr. Monica Fabbri
Notwithstanding the significant social progresses made in the last decades and the introduction of targeted political interventions, a male-female imbalance persists in modern Western societies. The consequence of this phenomenon, known as gender bias, have been studied at many different levels. For instance, women are underrepresented when it comes to higher leadership positions and numerous studies showed that gender bias in science disciplines and medicine is persistent today. Moreover, gender bias can be expressed in multiple ways, from more blatant to subtle manifestations, such as linguistic expressions adopted in everyday interactions.
Research in social cognition has shown that the roots of gender bias must be searched in the concept stereotype. Stereotypes are nothing else than labels that humans tend to attach to social entities and categories and that drive the way we think and behave. Following a social-cognitive approach, this course aims at providing a better understanding of gender bias by getting to know (i) what gender-stereotypes are; (ii) how they are formed and nourished by our society; (iii) what are their consequences; and (iv) what interventions can help dismantling them.
Finally, the course will include an in-depth analysis dedicated to the "Gender Equality Plan" approved by UniSR.
Statistical methods in R - Dr. Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced. The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Problem Solving Logics - Dr. Enrico Dalla Rosa
The focus of this class is human error. Our species did a good job in surviving the evolution lottery, thanks also to a good ability in avoiding - as a whole - fatal mistakes. But the growing complexity of the world makes it more and more important avoiding mistakes that can have dire consequences, particularly in some domains – medicine is one of them.
Although we like to think that, when facing challenging situations, we are basically rational, it's easy to show that most people - even those who have a very high IQ - can make, in an easily predictable way, relevant mistakes. During the cycle of lessons, we will try to vaccinate ourselves against some of the quite predictable biases that push us to do mistakes even we try as carefully as we can to avoid doing so.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
Diving into the data management plan (DMP) and IRIS - Dr. Silvia Corbetta and Dr. Marco Soriano
This course will discuss two essential research tools. The first part will focus on the DMP, i.e., a structured document which outlines all aspects of the research data lifecycle (e.g., data organisation and curation, adequate provisions for their preservation and sharing). Writing a DMP will address in advance all needs/challenges that are likely to be encountered over the course of a research project, and it is considered best practice, as it makes work more efficient and contributes to the long-term preservation of data. After introducing the typical components of a DMP practical information will be provided on how to address them. Furthermore, though the Q&A session students will have the chance to discuss the challenges their facing and clarify any doubt about their DMP.
The second part of the course will focus on the UniSR IRIS. After introducing the core concepts and principles in Open Access to publications, practical information will be provided on how to use IRIS for depositing, collecting and disseminating the publications.
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
Courses curriculum-specific:
Current Mechanism Understanding and Treatment Development in Epilepsy (NEN)
Epilepsy is a highly heterogeneous disorder affecting over 50 million people worldwide. Epileptic patients are characterized by recurrent seizures, which can vary widely in type and etiology. While some cases are clearly linked to genetic factors, others are caused by acquired conditions such as stroke, infection, traumatic brain injury, or tumors, which can disrupt the normal patterns of brain activity and lead to seizures. Notably, one-third of patients do not respond to current treatments. This PhD course will delve into the fundamental mechanisms underlying both genetic (Dr. Ethan Goldberg, Children's Hospital of Philadelphia) and acquired epilepsy (Dr. Cristophe Bernard, Institute of Systems Neuroscience, Aix Marseille Université, France). It will then explore secondary alterations that occur in the epileptic brain and discuss the potential to target these modifications for therapeutic interventions. (Dr. Anna Maria Vezzani, Mario Negri Institute for Pharmacological Research). Finally, the course will present innovative therapeutic approaches based on gene therapy, which are suitable for both genetic and acquired epilepsies (Prof. Gabriele Lignani, University College London). Delivered by leading experts, this course will offer participants an opportunity to deepen their understanding of epilepsy and contribute to the development of innovative solutions for identifying new mechanisms and therapies.The morning sessions will feature frontal lectures.In the afternoon of the first day, students will be invited to present papers in a Journal Club format. Furthermore, they will be divided in working groups and will be assigned with a specific research question to be developed into a short experimental plan. In the afternoon of the second day of the course, those works will be discussed together with the organizers and the experts. By completing this course, participants will acquire the following competencies:
- Understand the key mechanisms underlying both genetic and acquired epilepsy
- Learn about research tools and models used in epilepsy research
- Identify the challenges in developing new treatments and therapies for epilepsy
Speakers: Prof. Michele Simonato, University of Ferrara (Introduction); Dr. Ethan Goldberg (Mechanisms underlying genetic epilepsies); Dr. Christophe Bernard (Mechanisms of acquired epilepsies); Dr. Anna Maria Vezzani (Secondary modifications in the epileptic brain); Prof. Gabriele Lignani (Gene therapy in epilepsy)
Innovative approaches to model and treat muscular and neuromuscular diseases (GCT)
Muscular and neuromuscular diseases represent a heterogeneous group of disorders with significant medical and societal impact. Neuromuscular and muscular diseases share several key features, as they both affect components of the motor system responsible for movements, respiration, posture, and other physical functions. Both types of diseases often result in muscle weakness, atrophy, or impaired function, whether due to direct damage to the muscle (as in muscular diseases) or disruption of the neural input needed for muscle activation and maintenance (as in neuromuscular diseases). Many of these conditions have a genetic basis, involving mutations in structural proteins (e.g., dystrophin in muscular dystrophy) or proteins required for neuromuscular junction transmission (e.g., acetylcholine receptors in myasthenia gravis). Both categories can involve progressive degeneration, leading to reduced mobility, fatigue, and compromised quality of life. Addressing these conditions requires a multidisciplinary approach, combining insights from genetics, neurology, and regenerative medicine to develop effective treatments.
The treatment of muscular and neuromuscular diseases has been revolutionized by the introduction of innovative Advanced Therapy Medicinal Products (ATMPs), which include gene-modified cells, viral vectors, and innovative molecular tools. Gene therapy offers the possibility to address the root causes of these diseases by introducing, repairing, or silencing specific genetic sequences. Stem cell-based approaches, enable the replacement of damaged or dysfunctional muscle cells and provide platforms for sustained protein delivery. Furthermore, disease modeling, using either patient-derived induced pluripotent stem cells (iPSCs), organoids, or transgenic mouse models, has become instrumental in understanding the molecular mechanisms underlying muscular and neuromuscular disorders. These models recapitulate the disease pathology, enabling the testing of therapeutic strategies and the identification of novel actionable targets. These advanced modalities are also combined with precision medicine approaches to tailor treatments to individual patients’ genetic and phenotypic profiles. These cutting-edge therapies represent a paradigm shift in addressing the underlying pathology of muscular and neuromuscular diseases, offering hope for long-term efficacy and improved patient outcomes.
Nevertheless, despite recent advances, ATMPs aimed at treating muscular and neuromuscular diseases face several challenges that limit their current effectiveness. Efficient delivery remains a major hurdle, as large tissues like skeletal muscles and the peripheral nervous system require widespread and targeted distribution, often hindered by barriers such as the blood-nerve barrier. Immune responses to viral vectors, as well as the large size of certain therapeutic genes (e.g., dystrophin in Duchenne muscular dystrophy), further complicate treatment. The durability of therapeutic effects is also an issue, as transgene expression or cell engraftment often declines over time in the diseased tissue environment. Additionally, the heterogeneity of these diseases and the need to target multiple tissues, such as skeletal muscle and heart, complicate therapy design. Current experimental models frequently fail to replicate human disease complexities, limiting predictive success, while chronic inflammation and fibrosis in affected tissues hinder regenerative approaches. Finally, the high cost and challenges of manufacturing ATMPs at scale make these therapies difficult to access. These challenges underscore the need for continued research and innovation to improve current therapeutic strategies and modeling of the disease.
Sex as a biological variable in physiology and disease (CMB and BAIO)
In this course, students will gain a better understanding of molecular mechanisms underlying the sex difference. Sex differences in physiology and disease can be due to sex hormones coming from the testes or ovaries, however, sex differences can also be caused by genes on the sex chromosomes that act outside of the gonads affecting several processes including cancer development and immune system modulation. Besides listening to experts in the field, students will have the opportunity to further discuss with the speakers about these topics by preparing an introductory lesson and explore career path options to undertake after the completion of their predoctoral studies.
Role of microbiota in patients with haematological malignancies undergoing cellular therapies: from translational research to routine clinical practice (ECM)
The microbiome include the microbiota, their associated genes, and their environment.The microbiota is critical for preserving tissues and stimulating immunity, but its alterations have been linked to disease and defects in immunity. The microbiota dysbiosis depends on many factors, including chemotherapy regimens, antibiotics and diet. Compromised intestinal barrier function is a prominent feature of inflammatory bowel disease and is critical also in the pathogenesis of graft-versus-host disease, a serious, potentially fatal consequence of hematopoietic stem cell transplantation. In fact, the composition of intestinal bacteria and their metabolites have been found in large multicenter prospective studies to be strongly associated with GVHD, treatment-related mortality, and overall survival. Thus, the opportunity to modulate the microbiota has become a relevant issue to investigate for treating life-threating conditions. Available approaches include specific diet modification, use of prebiotic and probiotics but also fecal microbiota transplantation, and refined antibiotic treatment. This seminar will address the translational role of the microbiota in personalized therapies in different conditions, from disease to possible prevention of complications and improvement of prognosis.
Communicating research: Writing a paper - The editorial process - Embo Solutions
In this workshop, EMBO Press editors work with PhD students or Postdocs on the principles, practicalities and strategies of scientific publication. Topics covered include understanding the structure and content of a manuscript, assembling figures and writing effective titles and abstracts. The participants will also learn to navigate the editorial process at journals.
The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
Scientific Publishing - Dr. Roberto Buccione
The course is based on the assumption that the impact of scientific discoveries would be very limited without the communication of results to peers. This communication can take many forms, but most typically as peer-reviewed academic publications. The basic mechanisms of peer-review, the editorial process in scientific journals, and finally information on the correct attribution of authorship, based on rules accepted by the community, as well as the division of responsibilities and rights associated with authorship, will be discussed.
Gender Medicine - Prof. Alaide Chieffo and Prof. Andrea Salonia
Historically, medicine and biology have been developed using an androcentric approach, generalizing results to females and restricting sex differences to reproductive issues only. The course “Gender Medicine” will provide an introduction to the next-generation medicine, explain definitions, highlight normative references and resources, and discuss examples and implications for health research and services.
Writing Successful Fellowship Applications - Dr. Thiago Carvalho and Dr. David del Álamo (Fellowsherpa)
For many early career researchers, writing a fellowship application will be their first experience with the highly competitive scientific funding system. Fellowsherpa’s two-day interactive course exposes participants to some of the most prestigious international fellowships, including the Marie Skłodowska-Curie, EMBO, and Human Frontier Science Program postdoctoral programs.
Statistical methods in biomedical research - Prof. Paola Rancoita and Prof. Chiara Brombin
The course provides basic and advanced concepts for the collection, organization, and statistical analysis of data in the biomedical sciences. The course is divided into two modules:
MODULE 1: Inferential Statistics: comparison among groups and bivariate analysis.
MODULE 2 : Modelling the relationships between variables
Participation in modules not by year of enrollment but by skills.
Statistical methods in R - Dr. Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced.
The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Business Planning - Dr. Giancarlo Monza
Research and development (R&D) of today is the medical practice of tomorrow. Unfortunately, the sustainability of R&D is at risk. Other highly innovative areas (e.g. aerospace industry, IT and also … the Army) have tried to address the issue of sustainability by enhancing their project planning / execution capabilities and their focus on human factors.
During the conversations we will review the basic techniques of project planning and team (=people) performance to minimize / prevent human errors, focusing on the peculiarity of R&D in health care, where ethics and patient-centric approaches are paramount. Practical examples of failed and successfully completed projects in healthcare will be presented.
Fundamentals of AI in medicine - Dr. Patrick Scuri - Dr. Andrea Corvaglia - Dr. Marco Denti - Dr. Alberto Traverso
Artificial Intelligence (AI) is gaining more and more popularity in healthcare. Technologies enabling automation of time-consuming clinical tasks or clinical decision support systems based on machine learning, a branch of AI, will potentially improve cancer care. Nevertheless, the unconscious use of such algorithms, often developed outside the clinical domain, without involving the healthcare professionals will reduce the clinical impact, creating mistrust in AI. We will introduce to young clinical researchers the foundations of AI including an overview on major ML algorithms and their applications with healthcare data, design of clinical studies involving the development of AI algorithms, and privacy/ethical issues related to the usage of AI algorithms in a hospital.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
SPSS tutorial- Prof. Alessandro Ambrosi
This two-hour tutorial will focus on addressing relevant questions pertinent to daily clinical practice, with a particular emphasis on clinical research methodologies. Participants will be guided through the principal statistical analyses applicable to real-world clinical data. The tutorial will utilize IBM SPSS software, and students will adopt a hands-on, experiential learning approach to reinforce their understanding.
GraphPad tutorial - Prof. Giovanni Tonon
During this 2 hours tutorial, questions arising from the daily practice of research will be presented, and students guided through the most appropriate statistical tools and approaches to tackle them. The Graphpad Prism software will be used and students will be trained on its use.
Open Science in practice - Dr. SIlvia Corbetta - Dr. Maya Fedeli - Dr. Marco Soriano
The Open Science approach includes all practices that promote accessibility and transparency at all levels of the research project lifecycle, to ensure the reproducibility and social utility of scientific research. The course will be divided into two sessions. One session will focus on the fundamental principles of the Open Science approach, providing practical information, guidelines, and tools on how to make scientific publications (and other research outputs) open, as well as how to adopt a methodology such as Citizen Science, aimed at fostering collaboration between the scientific community and society. The other session will focus on feedback regarding the Data Management Plans (DMP) previously submitted by students, and will address the less clear aspects of responsible data management and sharing of research data.
Courses curriculum-specific:
Current Mechanism Understanding and Treatment Development in Epilepsy (NEN)
Epilepsy is a highly heterogeneous disorder affecting over 50 million people worldwide. Epileptic patients are characterized by recurrent seizures, which can vary widely in type and etiology. While some cases are clearly linked to genetic factors, others are caused by acquired conditions such as stroke, infection, traumatic brain injury, or tumors, which can disrupt the normal patterns of brain activity and lead to seizures. Notably, one-third of patients do not respond to current treatments. This PhD course will delve into the fundamental mechanisms underlying both genetic (Dr. Ethan Goldberg, Children's Hospital of Philadelphia) and acquired epilepsy (Dr. Cristophe Bernard, Institute of Systems Neuroscience, Aix Marseille Université, France). It will then explore secondary alterations that occur in the epileptic brain and discuss the potential to target these modifications for therapeutic interventions. (Dr. Anna Maria Vezzani, Mario Negri Institute for Pharmacological Research). Finally, the course will present innovative therapeutic approaches based on gene therapy, which are suitable for both genetic and acquired epilepsies (Prof. Gabriele Lignani, University College London). Delivered by leading experts, this course will offer participants an opportunity to deepen their understanding of epilepsy and contribute to the development of innovative solutions for identifying new mechanisms and therapies.The morning sessions will feature frontal lectures.In the afternoon of the first day, students will be invited to present papers in a Journal Club format. Furthermore, they will be divided in working groups and will be assigned with a specific research question to be developed into a short experimental plan. In the afternoon of the second day of the course, those works will be discussed together with the organizers and the experts. By completing this course, participants will acquire the following competencies:
- Understand the key mechanisms underlying both genetic and acquired epilepsy
- Learn about research tools and models used in epilepsy research
- Identify the challenges in developing new treatments and therapies for epilepsy
Speakers: Prof. Michele Simonato, University of Ferrara (Introduction); Dr. Ethan Goldberg (Mechanisms underlying genetic epilepsies); Dr. Christophe Bernard (Mechanisms of acquired epilepsies); Dr. Anna Maria Vezzani (Secondary modifications in the epileptic brain); Prof. Gabriele Lignani (Gene therapy in epilepsy)
Innovative approaches to model and treat muscular and neuromuscular diseases (GCT)
Muscular and neuromuscular diseases represent a heterogeneous group of disorders with significant medical and societal impact. Neuromuscular and muscular diseases share several key features, as they both affect components of the motor system responsible for movements, respiration, posture, and other physical functions. Both types of diseases often result in muscle weakness, atrophy, or impaired function, whether due to direct damage to the muscle (as in muscular diseases) or disruption of the neural input needed for muscle activation and maintenance (as in neuromuscular diseases). Many of these conditions have a genetic basis, involving mutations in structural proteins (e.g., dystrophin in muscular dystrophy) or proteins required for neuromuscular junction transmission (e.g., acetylcholine receptors in myasthenia gravis). Both categories can involve progressive degeneration, leading to reduced mobility, fatigue, and compromised quality of life. Addressing these conditions requires a multidisciplinary approach, combining insights from genetics, neurology, and regenerative medicine to develop effective treatments.
The treatment of muscular and neuromuscular diseases has been revolutionized by the introduction of innovative Advanced Therapy Medicinal Products (ATMPs), which include gene-modified cells, viral vectors, and innovative molecular tools. Gene therapy offers the possibility to address the root causes of these diseases by introducing, repairing, or silencing specific genetic sequences. Stem cell-based approaches, enable the replacement of damaged or dysfunctional muscle cells and provide platforms for sustained protein delivery. Furthermore, disease modeling, using either patient-derived induced pluripotent stem cells (iPSCs), organoids, or transgenic mouse models, has become instrumental in understanding the molecular mechanisms underlying muscular and neuromuscular disorders. These models recapitulate the disease pathology, enabling the testing of therapeutic strategies and the identification of novel actionable targets. These advanced modalities are also combined with precision medicine approaches to tailor treatments to individual patients’ genetic and phenotypic profiles. These cutting-edge therapies represent a paradigm shift in addressing the underlying pathology of muscular and neuromuscular diseases, offering hope for long-term efficacy and improved patient outcomes.
Nevertheless, despite recent advances, ATMPs aimed at treating muscular and neuromuscular diseases face several challenges that limit their current effectiveness. Efficient delivery remains a major hurdle, as large tissues like skeletal muscles and the peripheral nervous system require widespread and targeted distribution, often hindered by barriers such as the blood-nerve barrier. Immune responses to viral vectors, as well as the large size of certain therapeutic genes (e.g., dystrophin in Duchenne muscular dystrophy), further complicate treatment. The durability of therapeutic effects is also an issue, as transgene expression or cell engraftment often declines over time in the diseased tissue environment. Additionally, the heterogeneity of these diseases and the need to target multiple tissues, such as skeletal muscle and heart, complicate therapy design. Current experimental models frequently fail to replicate human disease complexities, limiting predictive success, while chronic inflammation and fibrosis in affected tissues hinder regenerative approaches. Finally, the high cost and challenges of manufacturing ATMPs at scale make these therapies difficult to access. These challenges underscore the need for continued research and innovation to improve current therapeutic strategies and modeling of the disease.
Sex as a biological variable in physiology and disease (CMB and BAIO)
In this course, students will gain a better understanding of molecular mechanisms underlying the sex difference. Sex differences in physiology and disease can be due to sex hormones coming from the testes or ovaries, however, sex differences can also be caused by genes on the sex chromosomes that act outside of the gonads affecting several processes including cancer development and immune system modulation. Besides listening to experts in the field, students will have the opportunity to further discuss with the speakers about these topics by preparing an introductory lesson and explore career path options to undertake after the completion of their predoctoral studies.
Role of microbiota in patients with haematological malignancies undergoing cellular therapies: from translational research to routine clinical practice (ECM)
The microbiome include the microbiota, their associated genes, and their environment.The microbiota is critical for preserving tissues and stimulating immunity, but its alterations have been linked to disease and defects in immunity. The microbiota dysbiosis depends on many factors, including chemotherapy regimens, antibiotics and diet. Compromised intestinal barrier function is a prominent feature of inflammatory bowel disease and is critical also in the pathogenesis of graft-versus-host disease, a serious, potentially fatal consequence of hematopoietic stem cell transplantation. In fact, the composition of intestinal bacteria and their metabolites have been found in large multicenter prospective studies to be strongly associated with GVHD, treatment-related mortality, and overall survival. Thus, the opportunity to modulate the microbiota has become a relevant issue to investigate for treating life-threating conditions. Available approaches include specific diet modification, use of prebiotic and probiotics but also fecal microbiota transplantation, and refined antibiotic treatment. This seminar will address the translational role of the microbiota in personalized therapies in different conditions, from disease to possible prevention of complications and improvement of prognosis.
How to review scientific papers - Embo Solutions
In this workshop, EMBO Press editors work with PhD students on the principles and practicalities of peer review. Topics covered include the key elements of good peer review and the role of peer review in publishing reproducible science. We also discuss ethical considerations such as conflicts of interest and give guidelines to young scientists about how to become good reviewers.
The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
Science Communication- Dr. Maya Fedeli
The Science Communication course is designed to develop the communication skills of PhD students, enabling them to convey the complex scientific concepts of research to a wider audience in a clear, engaging, and accessible manner. During the course, students will gain an understanding of science communication strategies, learn to translate technical language into a format understandable by the general public, and hone their skills in the use of different communication platforms and tools. After an introduction to the fundamentals of science communication, topics such as writing techniques and the use of clear and accessible language, development of presentation skills, visual communication, correct and impactful use of media and social media will be addressed.
Open Science in practice: principles and tools for open access to scientific publications and research data - Dr. Silvia Corbetta - Dr. Marco Soriano
The Open Science approach includes all practices that promote accessibility and transparency at all levels of the research project lifecycle. This course will introduce the core concepts and principles in Open Science (e.g., open access, data sharing) and provide guidelines and tools on how to make scientific publications and research data open, to guarantee reproducibility and societal utility of scientific research. Furthermore, practical information will be provided on how to use the institutional repositories for publications (IRIS) and data (ORDR).
Statistical methods in biomedical research - Prof. Paola Rancoita and Prof Chiara Brombin
The course provides basic and advanced concepts for the collection, organization, and statistical analysis of data in the biomedical sciences. The course is divided into two modules:
MODULE 1: Inferential Statistics: comparison among groups and bivariate analysis.
MODULE 2 : Modelling the relationships between variables
Participation in modules not by year of enrollment but by skills.
Statistical methods in R - Dr. Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced.
The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Project Assessment - Dr. Gianni Navalesi
And what happens if my scientific/clinical project is not going well? Shall we have some other opportunity, or shall we throw on the basket what we have done? We will focus on evaluating the importance of having at hand techniques of risk based approach, risk planning and risk minimization measures. These tools are aimed at mitigating any unwanted deviations from the scientific target.
In this regard, it will be highlighted the importance to have in mind other potential solutions in the case that the primary target could not be achieved. We will discuss some examples of drugs that have been repurposed from one clinical indication to another (i.e. Sildenafil),as well as the opportunity to switch to other fields such as Medical Devices or Food supplement
Fundamentals of AI in medicine - Dr. Patrick Scuri - Dr. Andrea Corvaglia - Dr. Marco Denti - Dr. Alberto Traverso
Artificial Intelligence (AI) is gaining more and more popularity in healthcare. Technologies enabling automation of time-consuming clinical tasks or clinical decision support systems based on machine learning, a branch of AI, will potentially improve cancer care. Nevertheless, the unconscious use of such algorithms, often developed outside the clinical domain, without involving the healthcare professionals will reduce the clinical impact, creating mistrust in AI. We will introduce to young clinical researchers the foundations of AI including an overview on major ML algorithms and their applications with healthcare data, design of clinical studies involving the development of AI algorithms, and privacy/ethical issues related to the usage of AI algorithms in a hospital.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
SPSS tutorial- Prof. Alessandro Ambrosi
This two-hour tutorial will focus on addressing relevant questions pertinent to daily clinical practice, with a particular emphasis on clinical research methodologies. Participants will be guided through the principal statistical analyses applicable to real-world clinical data. The tutorial will utilize IBM SPSS software, and students will adopt a hands-on, experiential learning approach to reinforce their understanding.
GraphPad tutorial - Prof. Giovanni Tonon
During this 2 hours tutorial, questions arising from the daily practice of research will be presented, and students guided through the most appropriate statistical tools and approaches to tackle them. The Graphpad Prism software will be used and students will be trained on its use.
Training program a.y. 2023/2024
Please find below the list of seminars and courses for a.y. 2023/2024.
Courses curriculum-specific:
Targeting RNA-binding proteins in neuronal degeneration and repair (NEN)
RNA-binding proteins (RBPs) play essential roles in neuronal development, function and maintenance by precisely controlling all aspects of mRNA regulation, including alternative splicing, stability, trafficking and translation. It is now clear that various neurological disorders are linked to aberrant RBP function and localization, and targeting this group of proteins could represent an attractive therapeutic strategy to prevent neuronal loss and/or promote neural repair. This course will provide an overview of the most recent advances in RBP functions in neural repair after injury as well as the latest evidence showing how targeting RBPs could represent an effective new avenue for treating neurodegenerative disorders.
Pluripotent stem cells and next generation therapies (GCT)
The advent of pluripotent stem cells has revolutionized the landscape of regenerative medicine. We will embark on this transformative journey with our cutting-edge PhD course focused on Pluripotent Stem Cells and Next-Generation Therapies. We will delve into how pluripotent stem cells can be harnessed to design and test new therapeutic approaches, exploring their unique ability to differentiate into diverse cell types. The program will cover the latest advancements in stem cell research, including CRISPR-based genome editing and synthetic biology approaches and will emphasize translating scientific insights into innovative therapies, fostering a deep appreciation for the ethical and regulatory dimensions of stem cell applications.
Molecular mechanisms of drug resistance in cells (CMB and BAIO)
In this course, students will gain a better understanding of molecular processes that cells imply to adapt to therapies and evade death. In details, the course will be dived into three sessions to have an overview about i) innovative quantitive methods to probe drug resistance; ii) epidemiology and evolution of resistance mechanisms in microorganisms, and iii) acquired resistance mechanisms to targeted therapy and immunotherapy. Besides learning about Molecular mechanisms of drug resistance in cells from experts in the field, students will have the opportunity to further discuss with the speakers about these topics by preparing a frontal lesson and explore career path options to undertake after the completion of their predoctoral studies.
Biomarkers for precision medicine (ECM)
The seminar has developed throughout the day the concept of biomarker in radiology and pathology, with a translational purpose.
Communicating research: Short oral presentation - Embo Solutions
In this workshop, EMBO Press editors work with PhD students on the principles, practicalities and strategies of scientific publication. The workshop is focused on how to effectively present your work in a short oral form in various contexts - e.g. poster presentation, flash talk or elevator pitch. The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
IT course - Dr. Lorenzo Cibrario
The course aims to provide PhD students with methodological and technological knowledge on the use of tools related to office automation, networking, cloud and cyber security. The course will cover the following topics: basic and advanced use of Microsoft Excel, advanced use of Microsoft Word, communication protocols and security protocols, basic elements of computer security, data protection and advanced cyber security techniques.
Research Integrity (parte I) - Dr. Roberto Buccione
The Research Integrity – General Principles seminar provides a basic overview of the core principles of research integrity, the definition of research misconduct and questionable research practice, general advice on dealing with the complex issues that can arise while planning, conducting and reporting research, and the functions and scope of the Research Integrity Office.
The primary verification of any scientific finding is its reproducibility, which however can occur only when all important steps can be retraced. They should therefore be documented with sufficient thoroughness that a person familiar with the subject would be able to reconstruct the experiments and considerations involved. The log/workbook a.k.a. the "lab book" (paper-based or digital) is the central repository for the logging of experimental protocols and procedures. The course provides a detailed overview of the current regulations and general advice on the logging of experimentation and data in the lab books.
Gender Equality - Dr. Simone Mattavelli – Dr. Monica Fabbri
Notwithstanding the significant social progresses made in the last decades and the introduction of targeted political interventions, a male-female imbalance persists in modern Western societies. The consequence of this phenomenon, known as gender bias, have been studied at many different levels. For instance, women are underrepresented when it comes to higher leadership positions and numerous studies showed that gender bias in science disciplines and medicine is persistent today. Moreover, gender bias can be expressed in multiple ways, from more blatant to subtle manifestations, such as linguistic expressions adopted in everyday interactions.
Research in social cognition has shown that the roots of gender bias must be searched in the concept stereotype. Stereotypes are nothing else than labels that humans tend to attach to social entities and categories and that drive the way we think and behave. Following a social-cognitive approach, this course aims at providing a better understanding of gender bias by getting to know (i) what gender-stereotypes are; (ii) how they are formed and nourished by our society; (iii) what are their consequences; and (iv) what interventions can help dismantling them.
Finally, the course will include an in-depth analysis dedicated to the "Gender Equality Plan" approved by UniSR.
Statistical methods in R - Dr. Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced. The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Problem Solving Logics - Dr. Enrico Dalla Rosa
The focus of this class is human error. Our species did a good job in surviving the evolution lottery, thanks also to a good ability in avoiding - as a whole - fatal mistakes. But the growing complexity of the world makes it more and more important avoiding mistakes that can have dire consequences, particularly in some domains – medicine is one of them.
Although we like to think that, when facing challenging situations, we are basically rational, it's easy to show that most people - even those who have a very high IQ - can make, in an easily predictable way, relevant mistakes. During the cycle of lessons, we will try to vaccinate ourselves against some of the quite predictable biases that push us to do mistakes even we try as carefully as we can to avoid doing so.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
Diving into the data management plan (DMP) and IRIS - Dr. Silvia Corbetta and Dr. Marco Soriano
This course will discuss two essential research tools. The first part will focus on the DMP, i.e., a structured document which outlines all aspects of the research data lifecycle (e.g., data organisation and curation, adequate provisions for their preservation and sharing). Writing a DMP will address in advance all needs/challenges that are likely to be encountered over the course of a research project, and it is considered best practice, as it makes work more efficient and contributes to the long-term preservation of data. After introducing the typical components of a DMP practical information will be provided on how to address them. Furthermore, though the Q&A session students will have the chance to discuss the challenges their facing and clarify any doubt about their DMP.
The second part of the course will focus on the UniSR IRIS. After introducing the core concepts and principles in Open Access to publications, practical information will be provided on how to use IRIS for depositing, collecting and disseminating the publications.
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
Courses curriculum-specific:
Targeting RNA-binding proteins in neuronal degeneration and repair (NEN)
RNA-binding proteins (RBPs) play essential roles in neuronal development, function and maintenance by precisely controlling all aspects of mRNA regulation, including alternative splicing, stability, trafficking and translation. It is now clear that various neurological disorders are linked to aberrant RBP function and localization, and targeting this group of proteins could represent an attractive therapeutic strategy to prevent neuronal loss and/or promote neural repair. This course will provide an overview of the most recent advances in RBP functions in neural repair after injury as well as the latest evidence showing how targeting RBPs could represent an effective new avenue for treating neurodegenerative disorders.
Pluripotent stem cells and next generation therapies (GCT)
The advent of pluripotent stem cells has revolutionized the landscape of regenerative medicine. We will embark on this transformative journey with our cutting-edge PhD course focused on Pluripotent Stem Cells and Next-Generation Therapies. We will delve into how pluripotent stem cells can be harnessed to design and test new therapeutic approaches, exploring their unique ability to differentiate into diverse cell types. The program will cover the latest advancements in stem cell research, including CRISPR-based genome editing and synthetic biology approaches and will emphasize translating scientific insights into innovative therapies, fostering a deep appreciation for the ethical and regulatory dimensions of stem cell applications.
Molecular mechanisms of drug resistance in cells (CMB and BAIO)
In this course, students will gain a better understanding of molecular processes that cells imply to adapt to therapies and evade death. In details, the course will be dived into three sessions to have an overview about i) innovative quantitive methods to probe drug resistance; ii) epidemiology and evolution of resistance mechanisms in microorganisms, and iii) acquired resistance mechanisms to targeted therapy and immunotherapy. Besides learning about Molecular mechanisms of drug resistance in cells from experts in the field, students will have the opportunity to further discuss with the speakers about these topics by preparing a frontal lesson and explore career path options to undertake after the completion of their predoctoral studies.
Biomarkers for precision medicine (ECM)
The seminar has developed throughout the day the concept of biomarker in radiology and pathology, with a translational purpose.
Communicating research: Writing a paper - The editorial process - Embo Solutions
In this workshop, EMBO Press editors work with PhD students or Postdocs on the principles, practicalities and strategies of scientific publication. Topics covered include understanding the structure and content of a manuscript, assembling figures and writing effective titles and abstracts. The participants will also learn to navigate the editorial process at journals.
The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
Research Integrity (parte II) - Dr. Roberto Buccione
The value and impact of scientific discovery would be very limited without the dissemination of findings to peers. Such communication may occur under many forms but most typically, as scholarly publications validated by peer-review. The course will illustrate the editorial process, the evolution of the current publishing paradigm, the emerging publishing models, and the dark side of publishing.
Gender Medicine - Dr. Cinthia Farina and Prof. Alaide Chieffo
Historically, medicine and biology have been developed using an androcentric approach, generalizing results to females and restricting sex differences to reproductive issues only. The course “Gender Medicine” will provide an introduction to the next-generation medicine, explain definitions, highlight normative references and resources, and discuss examples and implications for health research and services.
Writing Successful Fellowship Applications - Dr. Thiago Carvalho and Dr. David del Álamo (Fellowsherpa)
For many early career researchers, writing a fellowship application will be their first experience with the highly competitive scientific funding system. Fellowsherpa’s two-day interactive course exposes participants to some of the most prestigious international fellowships, including the Marie Skłodowska-Curie, EMBO, and Human Frontier Science Program postdoctoral programs.
The european research framework: policy, funding programmes and research management - Dr. Federica Prete – Dr. Maya Fedeli
The course aims to understand the journey from call topic, developing a project idea, writing a proposal to submission within the Horizon Europe and to provide knowledge and tools for the development of EU research projects. Moreover, the course will present Horizon Europe main features and the ERC and the Marie Curie Programmes. Finally, the course will introduce Citizen Science and how to integrate the this innovative approach into research projects.
Statistical methods in biomedical research - Prof. Paola Rancoita and Prof. Chiara Brombin
The course provides basic and advanced concepts for the collection, organization, and statistical analysis of data in the biomedical sciences. The course is divided into two modules:
MODULE 1: Inferential Statistics: comparison among groups and bivariate analysis.
MODULE 2 : Modelling the relationships between variables
Participation in modules not by year of enrollment but by skills.
Statistical methods in R - Dr. Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced.
The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Business Planning - Dr. Giancarlo Monza
Research and development (R&D) of today is the medical practice of tomorrow. Unfortunately, the sustainability of R&D is at risk. Other highly innovative areas (e.g. aerospace industry, IT and also … the Army) have tried to address the issue of sustainability by enhancing their project planning / execution capabilities and their focus on human factors.
During the conversations we will review the basic techniques of project planning and team (=people) performance to minimize / prevent human errors, focusing on the peculiarity of R&D in health care, where ethics and patient-centric approaches are paramount. Practical examples of failed and successfully completed projects in healthcare will be presented.
Fundamentals of AI in medicine - Prof. Carlo Tacchetti
Artificial Intelligence (AI) is gaining more and more popularity in healthcare. Technologies enabling automation of time-consuming clinical tasks or clinical decision support systems based on machine learning, a branch of AI, will potentially improve cancer care. Nevertheless, the unconscious use of such algorithms, often developed outside the clinical domain, without involving the healthcare professionals will reduce the clinical impact, creating mistrust in AI. We will introduce to young clinical researchers the foundations of AI including an overview on major ML algorithms and their applications with healthcare data, design of clinical studies involving the development of AI algorithms, and privacy/ethical issues related to the usage of AI algorithms in a hospital.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.
Follow-up on data management plan (DMP) and IRIS- Dr. Silvia Corbetta and Dr. Marco Soriano
This follow-up course aims at providing feedback on the DMPs submitted by the students and discuss common issues identified during the review process. The course also offers the opportunity to clarify any questions or uncertainties regarding the topics addressed in the submitted DMPs and provides clarifications on the features of our institutional repository IRIS.
Courses curriculum-specific:
Targeting RNA-binding proteins in neuronal degeneration and repair (NEN)
RNA-binding proteins (RBPs) play essential roles in neuronal development, function and maintenance by precisely controlling all aspects of mRNA regulation, including alternative splicing, stability, trafficking and translation. It is now clear that various neurological disorders are linked to aberrant RBP function and localization, and targeting this group of proteins could represent an attractive therapeutic strategy to prevent neuronal loss and/or promote neural repair. This course will provide an overview of the most recent advances in RBP functions in neural repair after injury as well as the latest evidence showing how targeting RBPs could represent an effective new avenue for treating neurodegenerative disorders.
Pluripotent stem cells and next generation therapies (GCT)
The advent of pluripotent stem cells has revolutionized the landscape of regenerative medicine. We will embark on this transformative journey with our cutting-edge PhD course focused on Pluripotent Stem Cells and Next-Generation Therapies. We will delve into how pluripotent stem cells can be harnessed to design and test new therapeutic approaches, exploring their unique ability to differentiate into diverse cell types. The program will cover the latest advancements in stem cell research, including CRISPR-based genome editing and synthetic biology approaches and will emphasize translating scientific insights into innovative therapies, fostering a deep appreciation for the ethical and regulatory dimensions of stem cell applications.
Molecular mechanisms of drug resistance in cells (CMB and BAIO)
In this course, students will gain a better understanding of molecular processes that cells imply to adapt to therapies and evade death. In details, the course will be dived into three sessions to have an overview about i) innovative quantitive methods to probe drug resistance; ii) epidemiology and evolution of resistance mechanisms in microorganisms, and iii) acquired resistance mechanisms to targeted therapy and immunotherapy. Besides learning about Molecular mechanisms of drug resistance in cells from experts in the field, students will have the opportunity to further discuss with the speakers about these topics by preparing a frontal lesson and explore career path options to undertake after the completion of their predoctoral studies.
Biomarkers for precision medicine (ECM)
The seminar has developed throughout the day the concept of biomarker in radiology and pathology, with a translational purpose.
How to review scientific papers - Embo Solutions
In this workshop, EMBO Press editors work with PhD students on the principles and practicalities of peer review. Topics covered include the key elements of good peer review and the role of peer review in publishing reproducible science. We also discuss ethical considerations such as conflicts of interest and give guidelines to young scientists about how to become good reviewers.
The course includes a balanced combination of theory presentation, group work, and interactive discussions to keep the participants engaged.
Research Integrity (parte III) - Dr. Roberto Buccione
Investigators have a general responsibility to contribute to science outreach and popularisation because they accomplish the high purpose of making research findings accessible to a non-expert audience, who might benefit from the information. Such activities also express the spirit of Responsible Research and Innovation (RRI). The course will show the pivotal importance of science communication in the career of a scientist. It is designed to enhance the communication skills of PhD students, understanding how to convey the complex scientific concepts of research to a wider audience in a clear, engaging, and accessible manner. During the course, students will gain an understanding of science communication strategies, learn to translate technical language into a format understandable by the general public, and hone their skills in the use of different communication platforms and tools.
Open Science in practice: principles and tools for open access to scientific publications and research data - Dr. Silvia Corbetta - Dr. Marco Soriano
The Open Science approach includes all practices that promote accessibility and transparency at all levels of the research project lifecycle. This course will introduce the core concepts and principles in Open Science (e.g., open access, data sharing) and provide guidelines and tools on how to make scientific publications and research data open, to guarantee reproducibility and societal utility of scientific research. Furthermore, practical information will be provided on how to use the institutional repositories for publications (IRIS) and data (ORDR).
Statistical methods in biomedical research - Prof. Paola Rancoita and Prof Chiara Brombin
The course provides basic and advanced concepts for the collection, organization, and statistical analysis of data in the biomedical sciences. The course is divided into two modules:
MODULE 1: Inferential Statistics: comparison among groups and bivariate analysis.
MODULE 2 : Modelling the relationships between variables
Participation in modules not by year of enrollment but by skills.
Statistical methods in R - Dr. Arianna Sala
The course covers practical topics in coding with R. The aim of the course is to show how R coding can be used to solve common issues encountered by neuroscientists. The course will provide a basic introduction to R, covering data management, statistical modelling and data visualization. Elements of scripting will be introduced.
The course will have a practical and interactive layout, with learning achieved mainly through presentation of real-life problems and solutions via hands-on activities.
Project Assessment - Dr. Gianni Navalesi
And what happens if my scientific/clinical project is not going well? Shall we have some other opportunity, or shall we throw on the basket what we have done? We will focus on evaluating the importance of having at hand techniques of risk based approach, risk planning and risk minimization measures. These tools are aimed at mitigating any unwanted deviations from the scientific target.
In this regard, it will be highlighted the importance to have in mind other potential solutions in the case that the primary target could not be achieved. We will discuss some examples of drugs that have been repurposed from one clinical indication to another (i.e. Sildenafil),as well as the opportunity to switch to other fields such as Medical Devices or Food supplement
Fundamentals of AI in medicine - Prof. Carlo Tacchetti
Artificial Intelligence (AI) is gaining more and more popularity in healthcare. Technologies enabling automation of time-consuming clinical tasks or clinical decision support systems based on machine learning, a branch of AI, will potentially improve cancer care. Nevertheless, the unconscious use of such algorithms, often developed outside the clinical domain, without involving the healthcare professionals will reduce the clinical impact, creating mistrust in AI. We will introduce to young clinical researchers the foundations of AI including an overview on major ML algorithms and their applications with healthcare data, design of clinical studies involving the development of AI algorithms, and privacy/ethical issues related to the usage of AI algorithms in a hospital.
PhD inter disciplinary seminars
Today more than ever, scientific research is a complex endeavor that requires wide knowledge outside of the specific context to produce impactful outcomes and help researchers thrive in a highly competitive environment.
This course was created by initiative of the Pro-Rector for scientific research and students together with the Research Policy Office (RPO) to discuss interdisciplinary themes, from the social impact of science to how to handle high-pressure workloads.
The aim is to stimulate critical, out of the box, thinking. The course will feature 3 seminars held by external experts, selected by a committee of PhD students from all 3 courses, coordinated by Monica Fabbri (RPO).
PhD students-invited lectures
The PhD student-invited lectures are seminars organized by a PhD Student Committee, composed of students from different research areas. The Committee selects and invites 3-4 international scientists each year. The invited scientists give lectures open to all institute members, and then dedicate a considerable amount of time to discuss with PhD students both about their research and more general topics, such as the pathway to becoming an independent researcher, etc. The PhD student-invited lectures offer students the opportunity to interact with top scientists in an informal environment and improve their networking skills, which are crucial in scientific research.
Career opportunities seminar series
The "Career Opportunities Seminar Series" aims to promote career prospects and professional opportunities for PhD students in the fields of research and related sectors, both public and private. The wide variety of potential career paths that PhD students can aspire to requires an understanding of the available opportunities.To promote this understanding and to create useful contacts with the working world, various seminars are organized by prominent professionals in different fields of interest, coming from both academic and corporate backgrounds. The seminars typically include a brief overview of the speaker's career path leading to their current position, a description of their activities, and finally, a phase of individual or group interviews with PhD students.